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Verzeichnis der Mitarbeitenden und Kompetenzen

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Jungo Rhême Carmen

Jungo Rhême Carmen

Professeure HES ordinaire/Responsable de centre de compétences

Hauptkompetenzen

Biotechnology

Process scale-up & -down

Mammalian cell culture

Microbiologie et bactériologie

Recombinant protein

Good Manufacturing Practices (GMP)

Project Management

Antimicrobial Resistance

Quality by Design (QbD)

Process Characterization

Protein purification

  • Kontakt

  • Lehre

  • Forschung

  • Publikationen

  • Konferenzen

  • Portfolio

Hauptvertrag

Professeure HES ordinaire/Responsable de centre de compétences

Haute école d'ingénierie et d'architecture de Fribourg
Boulevard de Pérolles 80, 1700 Fribourg, CH
HEIA-FR
BA HES-SO en Architecture - Haute école d'ingénierie et d'architecture de Fribourg
  • Génie des procédés

Laufend

Smart Algae Cultivation for Functional Food Applications: Enhancing ß-Glucan and Nutrient Bioaccessibility
AGP

Rolle: Hauptgesuchsteller/in

Financement: Fribourg Agri&Food

Description du projet : AlgaDigest aims to develop a sustainable method for producing functional ingredients from microalgae for food applications. The project combines autotrophic cultivation, a process in which microalgae use light energy and inorganic substances (like carbon dioxide and minerals) to produce their own food (without relying on organic matter), with phosphate limitation to enhance ß-glucans and other essential nutrients.

Forschungsteam innerhalb von HES-SO: Desriac Léa , Aka Nathalie , Balon Jonathan , Dietrich Sonia , Jungo Rhême Carmen

Partenaires académiques: FR - EIA - Institut ChemTech; Jungo Rhême Carmen, FR - EIA - Institut ChemTech

Durée du projet: 01.03.2026 - 31.03.2027

Montant global du projet: 148'460 CHF

Zustand : Laufend

Revolutionizing TissueSpan Mesh Production: Advanced Sterile, Single-Use Molds for Scalable and Certified Production Transition
AGP

Rolle: Hauptgesuchsteller/in

Financement: Mecaplast SA; INNOSQUARE; Regenosca SA; Medistri SA; Confinis SA

Description du projet : The main objective of this project is to develop an innovative single-use mold system for Regenosca's TissueSpan platform'a bio-absorbable mesh that fosters soft tissue regeneration without requiring a second surgical site. TissueSpan facilitates the body's natural healing by attracting the patient's own cells upon implantation. This process reduces the risks linked to traditional treatments and accelerates recovery, especially in urogynecology procedures. By creating a new mold system for mesh manufacturing, the project seeks to streamline production, enhancing scalability, safety, and efficiency. The development of this system will leverage the expertise of HEIA-FR, specifically the Institute of Applied Plastic Research and the Biofactory Competence Center. The industrial partners will provide critical application-oriented insights and support the co-development of scalable processes. Their involvement ensures the alignment of research outcomes with real-world manufacturing requirements, thereby laying a robust foundation for future industrial production. The anticipated results of the project include a refined manufacturing process that ensures smoother integration into certified cleanroom environments. The new single-use molding system will reduce the risk of operator errors, minimize contamination, and ensure that the meshes are produced with high consistency and quality. Furthermore, Regenosca will be ready to begin clinical trials, bringing TissueSpan one step closer to becoming a market-ready product. This will allow Regenosca to move forward with regulatory approvals and clinical applications, enhancing its position in the medical device sector.

Forschungsteam innerhalb von HES-SO: Morier Marin , Desriac Léa , Bürgisser Bruno , Rüeger Tristan , Taddei Kilian , Balon Jonathan , Raetzo Raphaël , Monney Eric , Maillard Philippe , Jungo Rhême Carmen

Partenaires académiques: FR - EIA - Institut ChemTech; FR - EIA - Institut iRAP

Durée du projet: 01.09.2025 - 30.04.2027

Montant global du projet: 243'000 CHF

Zustand : Laufend

Advanced Bioprocess 4.0 Manufacturing - Deep Dive
AGP

Rolle: Hauptgesuchsteller/in

Financement: DataHow AG; Data Innovation Alliance; Beckman Coulter International SA

Description du projet : This project is a case study which will demonstrate how digital technology and the use of artificial intelligence will transform the biotech industry. This project will also demonstrate process scalability and applicability of hybrid models at different scales. This project focuses on optimizing recombinant Green Fluorescent Protein (GFP) expression in E. coli using fed-batch cultures'a method commonly employed in the biopharmaceutical industry for recombinant protein production. Fed-batch cultures allow precise control of nutrient feeding, making them ideal for achieving high protein yields, but they require careful optimization of process parameters. By leveraging the BioLector XT for real-time, high-throughput data collection and combining it with advanced machine learning and mechanistic models in a Digital Twin platform, this project aims to accelerate process optimization, improve scalability, and ensure efficient protein production. The integration of small-scale and large-scale bioreactor data will confirm the hybrid model's validity, paving the way for streamlined, data-driven bioprocess development in the biopharma industry

Forschungsteam innerhalb von HES-SO: Varin Johan , Jungo Rhême Carmen

Partenaires académiques: FR - EIA - Institut ChemTech

Durée du projet: 10.02.2025 - 30.06.2026

Montant global du projet: 20'000 CHF

Zustand : Laufend

Bacteriophage Production Process Optimization to Fight against Antimicrobial Resistance
AGP

Rolle: Hauptgesuchsteller/in

Financement: HES-SO Rectorat

Description du projet : Antimicrobial resistance (AMR) is one of the major global public health threats according to the World Health Organization (WHO). It is estimated that in 2019 bacterial AMR was directly responsible for 1.27 million deaths worldwide and contributed to 4.95 million deaths. In the European Union, bacterial AMR are estimated to cause 35'000 deaths each year and the cost to the economy is significant: annual cost due to healthcare expenditures and productivity losses estimated at approximately '1.5 billion in the EU. New treatments for bacterial infections are urgently needed. One possibility is the use of `lytic' bacteriophages, or phages for short, which are viruses that very specifically infect and kill bacteria. Phages exist naturally all over the planet and can be found in water, soil, or animals. Phages have been used since the beginning of the 20th century for the treatment of bacterial infections (so-called phage therapy) but were progressively replaced by antibiotics after the Second World War in Western countries. Nowadays phage therapy is again seen as one complimentary and realistic approach to fight against difficult-to-treat bacterial infections. In this project, after successful technology transfer of a lab-scale Pseudomonas aeruginosa phage production process from the CHUV, Lausanne (Laboratory of Bacteriophages and Phage Therapy of Dr. Grégory Resch and Cell Production Center of Dr. Jean-François Brunet) to the Biofactory Competence Center (BCC) of the HEIA-FR, the process was characterized with a structured Quality-by-Design approach as outlined by the International Council for Harmonisation (ICH) of Technical Requirements for Pharmaceuticals for Human Use. The Critical Quality Attributes (CQAs) and Process Performance Attributes (PPAs) were identified based on the framework of requirements for Phage Therapy Medicinal Products (PTMPs) outlined in the European Pharmacopeia 11.6, general chapter 5.31 01/2025 © Council of Europe. A Failure Mode and Effects Analysis (FMEA) risk assessment that was performed to evaluate the criticality of process variables, including process parameters (PP) and material attributes (MA). This risk assessment served as the basis for the characterization and optimization studies of CHUV's P. aeruginosa phage production process. More precisely, the process variables with the highest potential influence on CQAs and/or PPAs were identified and further assessed for process characterization and optimization with Design of Experiment (DoE) studies. Results were already partially published in the journal Chimia in 2025 and presented in two conferences: ILMAC in September 2025 in Basel (Switzerland) and Viruses of Microbes conference in Prague in July 2026 (Th. In addition, assessment of phage production with `patient strains' instead of standardized `production strains' was evaluated in order to give recommendations for commercial phage production processes. For long term storage of phages at room temperature, lyophilization of the current final liquid formulation was assessed. Several excipients were tested, as well as the influence of lyophilization process parameters were evaluated. Results were presented at the JAFRAL Phage Summit 2026 in Ljubljana (Slovenia). At HES-SO Valais, sequencing, assembly, and annotation of the phage genome was successfully implemented to confirm phage identity. During the whole project, Dr. Grégory Resch from CHUV supported this project with his know-how in phage therapy and made available several P. aeruginosa phages with different morphologies for this project. P. aeruginosa is a gram-negative bacterium, which under certain conditions can be pathogenic. Highly resistant to conventional antibiotic treatment, it often causes nosocomial infections. The project focused on this pathogen since it is the main pathogen involved in lung infection of cystic fibrosis (CF) patients. This collaboration with CHUV formed the basis for the submission of an

Forschungsteam innerhalb von HES-SO: Grandjean Jessica , Brück Wolfram Manuel , Wegmüller Sarah , Emery Mabillard Martine , Maillard Philippe , Garcia Samuel , Adler Aline , Scotton Sarah , Lehner Bruno , Baudin Martine , Jungo Rhême Carmen

Partenaires académiques: VS - Institut Sciences du vivant; FR - EIA - Institut ChemTech

Durée du projet: 01.01.2025 - 31.07.2026

Montant global du projet: 214'946 CHF

Zustand : Laufend

Abgeschlossen

Recyclage écologique des déchets électroniques par biolixiviation à la HEIA-FR
AGP

Rolle: Hauptgesuchsteller/in

Financement: HES-SO Fribourg

Description du projet : Recyclage écologique des déchets électroniques par biolixiviation à la HEIA-FR

Forschungsteam innerhalb von HES-SO: Balon Jonathan , Martins Rui Jose , Jungo Rhême Carmen

Partenaires académiques: FR - EIA - Institut ChemTech

Durée du projet: 01.05.2025 - 31.10.2025

Montant global du projet: 4'800 CHF

Zustand : Abgeschlossen

Single-use molds for the production of surgical collagen meshes (128.887 INNO-ENG; ancien 76049.1 INNO-ENG)
AGP

Rolle: Hauptgesuchsteller/in

Financement: Innosuisse

Description du projet : A définir

Forschungsteam innerhalb von HES-SO: Bürgisser Bruno , Aka Nathalie , Taddei Kilian , Balon Jonathan , Raetzo Raphaël , Monney Eric , Dietrich Sonia , Jungo Rhême Carmen

Partenaires académiques: FR - EIA - Institut ChemTech; Jungo Rhême Carmen, FR - EIA - Institut ChemTech

Durée du projet: 09.04.2025 - 08.10.2025

Montant global du projet: 13'876 CHF

Zustand : Abgeschlossen

Leveraging Impedance Flow Cytometry for Optimizing Phage Production (127.436 INNO-LS; ancien num. 76086.1 INNO-LS)
AGP

Rolle: Hauptgesuchsteller/in

Financement: Innosuisse

Description du projet : The main goal is the evaluation of Impedance Flow Cytometry (ICF) as a monitoring tool in phage production processes. The research partner will evaluate if bacterial cell concentration and viability can effectively be monitored by IFC during phage amplification, and how IFC, compares to traditional methods like Optical Density (OD) and Colony-Forming Unit (CFU) counts in terms of accuracy, reliability, and ease of use. The insights for a future collaboration are the optimization of the phage amplification process by ICF. This technology could be used for real-time monitoring and optimization of the process parameters, such as Multiplicity of Infection (ratio of phage particles to bacterial cells), incubation time and harvesting point for high phage titers and minimal endotoxin release. This work could demonstrate IFC as a transformative tool for phage production, optimizing critical steps in the process.

Forschungsteam innerhalb von HES-SO: Dabros Michal , Garcia Samuel , Jungo Rhême Carmen

Partenaires académiques: FR - EIA - Institut ChemTech; Jungo Rhême Carmen, FR - EIA - Institut ChemTech

Durée du projet: 04.02.2025 - 03.08.2025

Montant global du projet: 13'876 CHF

Zustand : Abgeschlossen

2025

Optimizing the Production of Therapeutic Bacteriophages Through Quality by Design: A Case Study on Pseudomonas Aeruginosa
Wissenschaftlicher Artikel

Jungo Rhême Carmen

Chimia, 2025 , vol.  79, no  9

Link zur Publikation

Zusammenfassung:

A Failure Modes and Effects Analysis (FMEA) risk assessment was conducted to evaluate and document
the criticality of process parameters and material attributes involved in a Pseudomonas aeruginosa phage
production process. This assessment was carried out following the principles of Quality by Design (QbD) as
outlined by the International Council for Harmonisation (ICH) of Technical Requirements for Pharmaceuticals for
Human Use. By systematically identifying and controlling critical factors, this approach contributes to the development
of a more robust and reproducible phage production process, ultimately enhancing process efficiency
and product quality.

2014

Yeast Suspension culture.
Wissenschaftlicher Artikel
Industrial Scale Suspension Culture of Living Cells.

Jungo Rhême Carmen, D. Mattanovich, J. Wenger, Dabros Michal, M. Maurer

Book in Wiley VCH Verlag GmBh & Co. KGaA, 2014 , pp.  94-129

2010

Design and Optimization of a Large Scale Biopharmaceutical Facility Using Process Simulation and Scheduling Tools.
Wissenschaftlicher Artikel

Jungo Rhême Carmen, A. Toumi, V. Paravasileiou, D. Petrides, C. Jürgens, B. Maier

ISPE, 2010 , vol.  2, no  30

2008

An Emerging Star for Therapeutic and Catalytic Protein Production.
Wissenschaftlicher Artikel

Jungo Rhême Carmen, H.P. Meyer, J. Brass, J. Klein, J. Wenger, R Mommers

BioProcess International, 2008

2007

Mixed feeds of glycerol and methanol can improve the performance of Pichia pastoris cultures
Wissenschaftlicher Artikel
A quantitative study based on concentration gradients in transient continuous cultures.

Jungo Rhême Carmen, I.W. Marison, U. von Stockar

Journal of Biotechnology, 2007 , vol.  4, no  128, pp.  824-837

Regulation of alcohol oxidase of a recombinant Pichia pastoris Mut+ strain in transient continuous cultures.
Wissenschaftlicher Artikel

Jungo Rhême Carmen, I. W. Marison, U. von Stockar

Journal of Biotechnology, 2007 , vol.  3, no  130, pp.  236-246

A quantitative analysis of the benefits of mixed feeds of sorbitol and methanol for the production of recombinant avidin with Pichia pastoris.
Wissenschaftlicher Artikel

Jungo Rhême Carmen, J. Schenk, M. Pasquier, I.W. Marison, U. von Stockar

Journal of Biotechnology, 2007 , vol.  1, no  131, pp.  57-66

Influence of specific growth rate on specific productivity and glycosylation of a recombinant avidin produced by a Pichia pastoris Mut+ strain.
Wissenschaftlicher Artikel

Jungo Rhême Carmen, J. Schenk, K. Balazs, J. Urfer, C. Wegmann, A. Zocchi, I.W. Marison, U. von Sockar

Biotechnology and Bioengineering, 2007 , vol.  2, no  99, pp.  368-377

Optimisation of culture conditions with respect to biotin requirement for the production of recombinant avidin in Pichia pastoris.
Wissenschaftlicher Artikel

Jungo Rhême Carmen, J. Urfer, A Zocchi, I.W. Marison, U. von Stockar

Journal of Biotechnology, 2007 , vol.  4, no  127, pp.  703-715

2006

Quantitative characterization of the regulation of the synthesis of alcohol oxidase and of the expression of recombinant avidin in a Pichia pastoris Mut+ strain.
Wissenschaftlicher Artikel

Jungo Rhême Carmen, C. Rérat, I.W. Marison, U. Stockar

Enzyme and Microbial Technology, 2006 , vol.  39, no  4, pp.  936-944

2025

Quality by Design - Driven Process Characterization of Bacteriophage Production to Combat Antimicrobial-Resistant P. aeruginosa
Konferenz

Jungo Rhême Carmen

ILMAC 2025, 17.09.2025 - 19.03.2026, Basel

Link zur Konferenz

Zusammenfassung:

Antimicrobial resistance (AMR) is recognized by the World Health Organization (WHO) as the fifth most critical global public health threat. The rapid spread of drug-resistant pathogens threatens our ability to treat even common bacterial infections with existing antibiotics. New treatments for bacterial infections are urgently needed. One possibility is the use of ‘lytic’ bacteriophages, or phages for short, which are viruses that very specifically infect and kill bacteria.

This lecture will highlight the importance of integrating Quality by Design principles into the development of phage manufacturing processes.

Quality by Design (QbD) is essential for ensuring the consistency, safety, and efficacy of bacteriophage-based therapies, particularly as these treatments gain increasing interest as alternatives to antibiotics. Applying QbD during the development of phage manufacturing processes allows for a systematic understanding of critical factors influencing phage amplification, purification, and stability. By identifying and controlling critical quality attributes (CQAs) and process parameters early on, QbD minimizes batch-to-batch variability, enhances scalability, and ensures regulatory compliance. Integrating QbD principles into development studies is crucial to accelerate the path to clinical and commercial application.

More precisely, the production process for Pseudomonas aeruginosa phages developed at the CHUV (University Hospital Lausanne) by Dr. Grégory Resch is used as a case study. P. aeruginosa is a gram-negative bacterium, which under certain conditions can be pathogenic.

The P. aeruginosa phage production process is being assessed and characterized using a Quality by Design (QbD) approach in a well-controlled bioreactor environment to enable process optimization and redesign. A Failure Modes and Effects Analysis (FMEA) risk assessment was conducted to evaluate the criticality of process parameters, material attributes, and in-process testing involved in phage production and purification. This assessment, aligned with QbD principles recommended by the International Council on Harmonisation (ICH), provides a foundation for further characterization and optimization of the P. aeruginosa phage manufacturing process.

The QbD approach and the ongoing process characterization studies will be presented.

Project partners:

  • Laboratory of Bacteriophages and Phage Therapy, Center for Research and Innovation in Pharmaceutical Clinical Sciences (CRISP), Lausanne University Hospital (CHUV), Dr. Grégory Resch
  • Cell Production Center (CPC) Service of Pharmacy, Lausanne University Hospital (CHUV), Dr. Jean-François Brunet
  • HES-SO Valais, Prof. Wolfram Brück

2024

Innovate Together at Biofactory Competence Center
Konferenz

Jungo Rhême Carmen

AMPHACADEMY BIOPROCESSING, 07.11.2024 - 07.11.2024, Root D4, Luzern, Switzerland

Link zur Konferenz

Zusammenfassung:

Precision cell culture monitoring offers significant advantages during bioprocess development and in production, enhancing both process efficiency and product quality.

Online monitoring tools provide real-time data, allowing for immediate adjustments and optimization of the process.

Overall, it leads to improved consistency and reliability, and it supports better compliance with regulatory standards by ensuring continuous oversight and documentation.

The integration of these tools into bioprocesses represents a crucial step towards more advanced and automated biomanufacturing.

2008

Alternative cultivation strategies with Pichia pastoris for the production of therapeutic recombinant proteins.
Konferenz

Jungo Rhême Carmen

BioTech 2008 and 4th Swiss-Czech Symposium, 22.05.2008 - 23.05.2008, Wädenswil (CH)

Link zur Konferenz

2006

Rapid and rational strain characterization with transient continuous cultures monitored by calorimetry
Konferenz

Jungo Rhême Carmen

6th European Symposium on Biochemical Engineering Science, 27.08.2006 - 30.08.2006, Salzbourg, Austria

2005

Understanding regulation of recombinant protein expression in Pichia pastoris.
Konferenz

Jungo Rhême Carmen

BioTech 2005 and 3rd Swiss-Czech Symposium, 17.05.2005 - 19.05.2005, Wädenswil (CH)

Link zur Konferenz

Errungenschaften

2023

Research projects in biopharmaceutical industry

 2023 ; Upstream and downstream process development and implementation

Collaborateurs: Jungo Rhême Carmen

I led research projects in industry, for example at Lonza Biopharmaceutical R&D Upstream process development group where I developed new processes for the expression and production of therapeutic proteins by fermentation with bacteria (Escherichia coli, Bacillus subtilis, Pseudonomas strains) and yeasts (Pichia pastoris) and supervised up to 5 lab technicians. More precisely, I was responsible for the development and optimization of new microbial processes at lab scale as well as the scale-up and technology transfer to the manufacturing scale. Part of my research activities were published and presented in international conferences. At CSL Behring AG, I managed 3 teams of senior scientists and technicians, in total 18 people, for the development and optimization of the purification processes for the manufacturing of plasma-derived biotherapeutic proteins. The main responsibility was the delivery of a robust and well-characterized Immunoglobulin manufacturing process achieving higher IgG yields for the products Privigen® and
Hizentra®, which are among the most important products in the CSL Behring portfolio. This work was confidential and was not publised.

2020

Project management for biopharmaceutical industry

 2020 ; Project execution and implementation

Collaborateurs: Jungo Rhême Carmen

At CSL Behring AG, I was first responsible the first two years for the initiation, planning, execution and monitoring of global and local R&D projects predominantly around life cycle management of drug products, ensuring detailed, realistic and accurate planning in regard to timelines and resources.
I then moved to the Strategic Projet Portfolio and Operational Excellence Department and I was responsible for the execution of „Genesis II“ project, which consisted in the upgrade of a manufacturing bulk facility, the adaptation of an existing filing line, the implementation of a new lyophilisation facility,
the upgrade of visual inspection and the implementation of packaging & labelling for the launch of the new commercial product called “CSL112”, which is an active Apolipoprotein A-I, purified from human plasma. In this project I assembled and managed a cross-functional project team of more than 30 team
members for a total investment of 90 mio USD.

2008

Expression of recombinant proteins with Pichia pastoris

 2008 ; Upstream process development, technology transfer and scale up

Collaborateurs: Jungo Rhême Carmen

During my PhD Thesis at EPFL, I developed new fed-batch cultivation strategies with mutliple nutrient limitations for the improved high cell density production of recombinant therapeutic proteins with yeasts (Pichia pastoris). I published my work in four publications as first author and I presented my
achievements at two international conferences. The outcome was implemented for example at Lonza at large scale for the optimal expression of recombinant proteins with the yeast Pichia pastoris.

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