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PEOPLE@HES-SO – Annuaire et Répertoire des compétences
PEOPLE@HES-SO – Annuaire et Répertoire des compétences

PEOPLE@HES-SO
Annuaire et Répertoire des compétences

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Simalatsar Alena

Simalatsar Alena

Adjointe scientifique HES

Compétences principales

Medical Devices

Brain imaging (EEG, MRI)

Digital Signal Processing

Medical diagnostic systems

Closed-loop drug delivery systems

HW/SW systems design and analysis

Data Analysis

  • Contact

  • Publications

Contrat principal

Adjointe scientifique HES

Bureau: HEIA_D30.05

Haute école d'ingénierie et d'architecture de Fribourg
Boulevard de Pérolles 80, 1700 Fribourg, CH
HEIA-FR
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2024

Long short-term-memory-based depth of anesthesia index computation for offline and real-time clinical application in pigs
Article scientifique ArODES

Benjamin Caillet, Gilbert Maître, Steve Devènes, Darren Hight, Alessandro Mirra, Olivier L. Levionnois, Alena Simalatsar

Frontiers in Medical Engineering,  2024, 2

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Résumé:

We here present a deep-learning approach for computing depth of anesthesia (DoA) for pigs undergoing general anesthesia with propofol, integrated into a novel general anesthesia specialized MatLab-based graphical user interface (GAM-GUI) toolbox. This toolbox permits the collection of EEG signals from a BIOPAC MP160 device in real-time. They are analyzed using classical signal processing algorithms combined with pharmacokinetic and pharmacodynamic (PK/PD) predictions of anesthetic concentrations and their effects on DoA and the prediction of DoA using a novel deep learning-based algorithm. Integrating the DoA estimation algorithm into a supporting toolbox allows for the clinical validation of the prediction and its immediate application in veterinary practice. This novel, artificial-intelligence-driven, user-defined, open-access software tool offers a valuable resource for both researchers and clinicians in conducting EEG analysis in real-time and offline settings in pigs and, potentially, other animal species. Its open-source nature differentiates it from proprietary platforms like Sedline and BIS, providing greater flexibility and accessibility.

Measure of the prediction capability of EEG features for depth of anesthesia in pigs
Article scientifique ArODES

Benjamin Caillet, Gilbert Maître, Alessandro Mirra, Olivier L. Levionnois, Alena Simalatsar

Frontiers in Medical Engineering,  2024, 2

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Résumé:

In the medical and veterinary fields, understanding the significance of physiological signals for assessing patient state, diagnosis, and treatment outcomes is paramount. There are, in the domain of machine learning (ML), very many methods capable of performing automatic feature selection. We here explore how such methods can be applied to select features from electroencephalogram (EEG) signals to allow the prediction of depth of anesthesia (DoA) in pigs receiving propofol. We evaluated numerous ML methods and observed that these algorithms can be classified into groups based on similarities in selected feature sets explainable by the mathematical bases behind those approaches. We limit our discussion to the group of methods that have at their core the computation of variances, such as Pearson’s and Spearman’s correlations, principal component analysis (PCA), and ReliefF algorithms. Our analysis has shown that from an extensive list of time and frequency domain EEG features, the best predictors of DoA were spectral power (SP), and its density ratio applied specifically to high-frequency intervals (beta and gamma ranges), as well as burst suppression ratio, spectral edge frequency and entropy applied to the whole spectrum of frequencies. We have also observed that data resolution plays an essential role not only in feature importance but may impact prediction stability. Therefore, when selecting the SP features, one might prioritize SP features over spectral bands larger than 1 Hz, especially for frequencies above 14 Hz.

2023

Synthetic biomedical data generation in support of In Silico Clinical Trials
Article scientifique ArODES

Alena Simalatsar

Frontiers in Big Data,  2023, 6

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Résumé:

Living in the era of Big Data, one may advocate that the additional synthetic generation of data is redundant. However, to be able to truly say whether it is valid or not, one needs to focus more on the meaning and quality of data than on the quantity. In some domains, such as biomedical and translational sciences, data privacy still holds a higher importance than data sharing. This by default limits access to valuable research data. Intensive discussion, agreements, and conventions among different medical research players, as well as effective techniques and regulations for data anonymization, already made a big step toward simplification of data sharing. However, the situation with the availability of data about rare diseases or outcomes of novel treatments still requires costly and risky clinical trials and, thus, would greatly benefit from smart data generation. Clinical trials and tests on animals initiate a cyclic procedure that may involve multiple redesigns and retesting, which typically takes two or three years for medical devices and up to eight years for novel medicines, and costs between 10 and 20 million euros. The US Food and Drug Administration (FDA) acknowledges that for many novel devices, practical limitations require alternative approaches, such as computer modeling and engineering tests, to conduct large, randomized studies. In this article, we give an overview of global initiatives advocating for computer simulations in support of the 3R principles (Replacement, Reduction, and Refinement) in humane experimentation. We also present several research works that have developed methodologies of smart and comprehensive generation of synthetic biomedical data, such as virtual cohorts of patients, in support of In Silico Clinical Trials (ISCT) and discuss their common ground.

2018

Robustness analysis of personalised delivery rate computation for IV administered anesthetic
Article scientifique ArODES

Alena Simalatsar, Monica Guidi, Pierre Roduit, Thierry Buclin

Smart Health,  2018, vol. 9-10, pp. 101-114

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Résumé:

Controlled delivery of intravenous (IV) anesthetics aims at fast and safe achievement and maintenance of a suitable depth of hypnosis (DOH), by ensuring appropriate effect site (i.e. brain) exposure to the drug. Today, such drugs are regularly injected by Target Controlled Infusion (TCI) systems, piloted by an open-loop algorithm based on Pharmacokinetic (PK) models. Yet the inaccuracy of concentration prediction of current TCI can reach up to 100%. The situation could be improved by closing the loop with sensors providing regular real measurements of the anesthetic concentration in body fluids. In this paper we present a closed-loop algorithm based on the classic open-loop algorithm combined with a Kalman filter. The latter estimates plasma drug concentration based on PK model and sensor measurements. The estimates are then used in the open-loop algorithm. To validate our approach measurements are generated by means of modulating the population-based plasma concentration values with the maximum inter- and intrapatient variability of the statistical Eleveld׳s (Eleveld et al., 2014) PK model. This allows us to stress the system to a maximum level prior to testing it on patients. We also perform robustness analysis of this algorithm by accounting for realistic measurement periods and delays.

Safe and efficient deployment of data-parallelizable applications on many-core platforms :
Article scientifique ArODES
theory and practice

Stefanos Skalistis, Frederico Angiolini, Giovanni de Micheli, Alena Simalatsar

IEEE Design Test,  2018, vol. 35, no. 4, pp. 7-15

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Résumé:

Editor's note: This article proposes runtime adaptation of data-parallelizable applications on many-core platforms to improve the system performance while still meeting the timing deadlines. -Tulika Mitra, National University of Singapore-Jürgen Teich, University of Erlangen-Nürnberg-Lothar Thiele, Swiss Federal Institute of Technology, Zurich.

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